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    <title>Stm on Jack Hellerstedt</title>
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      <title>Chirality in 2D Metal-Organic Framework</title>
      <link>https://jhell.imipolex.biz/2025/10/20/chirality-in-2d-metal-organic-framework/</link>
      <pubDate>Mon, 20 Oct 2025 12:00:00 +1000</pubDate>
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      <description>&lt;p&gt;Another installment in the annals of the bullying of the Shockley surface state, this time the trick isn’t exotic adatoms or massive molecular weight, just a 120° tilt of hexaazatriphenylene (HAT) ligands that converts an achiral lattice into a pair of enantiomeric 2-D metal–organic frameworks. The result: &lt;strong&gt;chirality-imposed scattering potentials that lift degeneracies and open ΔE ≈ 80 meV gaps&lt;/strong&gt; in the Ag(111) two-dimensional electron gas while leaving the global periodicity intact.&lt;/p&gt;</description>
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    <item>
      <title>scanbot</title>
      <link>https://jhell.imipolex.biz/2024/07/16/scanbot/</link>
      <pubDate>Tue, 16 Jul 2024 12:00:00 +1000</pubDate>
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      <description>&lt;p&gt;Jules has put in the hard yards implementing &lt;a href=&#34;https://github.com/New-Horizons-SPM/nanonisTCP&#34;&gt;nanonisTCP&lt;/a&gt; as a python module, and leveraged that to create &lt;a href=&#34;https://github.com/New-Horizons-SPM/scanbot&#34;&gt;scanbot&lt;/a&gt;, a tool for automating the tasks of preparing a good imaging &amp;amp; spectroscopy probe, as well as a suite of functions for performing nuanced, drift-corrected measurements over very long timescales.&lt;/p&gt;
&lt;p&gt;See the below example of systematically grid scanning 100x100nm images to concatenate a comprehensive view of the surface.  Right is the upper left red corner, where self-assembled molecular islands are visible.&lt;/p&gt;</description>
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      <title>MgPc ARPES</title>
      <link>https://jhell.imipolex.biz/2022/08/18/mgpc-arpes/</link>
      <pubDate>Thu, 18 Aug 2022 12:00:00 +1000</pubDate>
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      <description>&lt;p&gt;We had the opportunity to use the&lt;a href=&#34;https://www.ansto.gov.au/user-access/instruments/australian-synchrotron-beamlines/soft-x-ray-spectroscopy/technical&#34;&gt; new toroidal analyzer at the Australian synchrotron&lt;/a&gt; to do &lt;a href=&#34;https://en.wikipedia.org/wiki/Angle-resolved_photoemission_spectroscopy&#34;&gt;ARPES&lt;/a&gt; of self-assembled monolayers of MgPc on Ag100.&lt;/p&gt;
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&lt;p&gt;Careful simultaneous fitting of different high-symmetry EDC measurements, in concert with the structural understanding gleaned from ncAFM &amp;amp; LEED characterization, allowed us to tease out a feature with bandwidth 20 meV, which was surprising to us given that we did the ARPES at room temperature.&lt;/p&gt;</description>
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      <title>Counting Molecules</title>
      <link>https://jhell.imipolex.biz/2022/03/09/counting-molecules/</link>
      <pubDate>Wed, 09 Mar 2022 12:00:00 +1000</pubDate>
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      <description>&lt;p&gt;&lt;a href=&#34;https://pubchem.ncbi.nlm.nih.gov/compound/9-Azidophenanthrene&#34;&gt;9-azidophenanthrene&lt;/a&gt; produces a &lt;a href=&#34;http://doi.org/10.1002/anie.201812334&#34;&gt;rich manifold of products&lt;/a&gt; when deposited on Ag(111).&lt;br&gt;&lt;br&gt;The images we took for this study inspired this work to develop a lightweight script to count the molecules we observed, and categorize them.&lt;br&gt;&lt;br&gt;Our personal journey of computer vision rediscovery led us to &lt;a href=&#34;https://en.wikipedia.org/wiki/Zernike_polynomials&#34;&gt;Zernike moments&lt;/a&gt;, a rotationally invariant basis set that solves the problem of identifying the same molecules with relative rotations, in an image.&lt;br&gt;&lt;br&gt;We put some effort into making &lt;a href=&#34;https://github.com/thennen/counting-molecules&#34;&gt;this module&lt;/a&gt; user-friendly, the &lt;a href=&#34;https://github.com/thennen/counting-molecules/tree/master/examples&#34;&gt;example scripts&lt;/a&gt; offer a reasonable template to apply to any old SXM file you might want to histogram.&lt;/p&gt;</description>
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      <title>MgPc-MgPc Hybridization</title>
      <link>https://jhell.imipolex.biz/2021/02/13/mgpc-mgpc-hybridization/</link>
      <pubDate>Sat, 13 Feb 2021 12:00:00 +1000</pubDate>
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&lt;figure class=&#34;wp-block-image size-large&#34;&gt;&lt;img fetchpriority=&#34;high&#34; decoding=&#34;async&#34; width=&#34;683&#34; height=&#34;1024&#34; src=&#34;https://jhell.imipolex.biz/images/blog/mgpc-mgpc-hybridization/mgpc-ncafm-registration.png&#34; alt=&#34;ncAFM atomic registration of MgPc molecule on Ag100&#34; class=&#34;wp-image-44&#34; /&gt;&lt;figcaption&gt;nc-AFM atomic registration of single MgPc molecule on Ag100 (surface atoms top and bottom stripes)&lt;/figcaption&gt;&lt;/figure&gt;
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&lt;p&gt;Marina Castelli studied the &lt;a rel=&#34;noreferrer noopener&#34; href=&#34;https://en.wikipedia.org/wiki/Phthalocyanine&#34; target=&#34;_blank&#34;&gt;phthalocyanine&lt;/a&gt; containing magnesium (MgPc) via 5K scanned probe microscopies extensively during her &lt;a rel=&#34;noreferrer noopener&#34; href=&#34;https://doi.org/10.26180/5f598923d1e83&#34; target=&#34;_blank&#34;&gt;PhD.&lt;/a&gt;&lt;br&gt;&lt;br&gt;&amp;#8216;Routine&amp;#8217; STM characterisation showed that the molecules were interacting with one another on the Ag100 surface.&lt;br&gt;&lt;br&gt;&lt;a rel=&#34;noreferrer noopener&#34; href=&#34;https://en.wikipedia.org/wiki/Non-contact_atomic_force_microscopy&#34; target=&#34;_blank&#34;&gt;ncAFM&lt;/a&gt; showed identical contrast for all molecules, pointing to an electronic origin to the observed changes in appearance.&lt;br&gt;&lt;br&gt;Our key observation was to track the &lt;em&gt;shape&lt;/em&gt; of the occupied LUMO for different pairwise distances, an electronic feature that otherwise remained isoenergetic.&lt;/p&gt;</description>
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